Slide scan

Slide scan creates a digital copy of the slide and provides it on the Celly website.

The test works just in configuration with motorized stage connected.

Initial settings

Open the Celly App -> settings (gear icon):

• Crop: 0.10-0.15 (green rectangle shouldn't fall on the black borders)

• Mini-map: Off

• Motorized Stage: On (can require app restart)

• Motorized Slide Scan: On

• Skip prescan step: On

• Virtual pad: On

• Adapter: Other

• Recording: Off

Open the Celly App -> configure analysis -> Type = Slide Scan.

Now we should make important calibrations.

Set scan area

Settings -> Set scan area -> Move with virtual pad, to take the scan area.

Color calibration

Move with Virtual Pad to the empty area.

Settings -> Choose Objective magnification x4 (+ set physically x4 objective) -> calibrate color.

Repeat the procedure for all magnifications. After the calibrations restart the app.

Height calibration

Move with Virtual Pad to area with tissue. Set x10 objective.

Settings -> Calibrate height -> wait for the device automatically find the best focus.

Now you can make slide scans.

Scanning

Open the Celly App -> configure analysis -> Type = Slide Scan.

Push "Start" button and follow instructions.

After the step go to the website. Open the Tests page. Push the View button to open your scan.

Hold <SHIFT> to add annotation on the scan

First Steps

What's next?

The best way to explore the Celly interface is to check the Education module, which includes:

• Cell Atlas

• Examination page